Igv input file format：File Formats

File Formats

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IGV

https://software.broadinstitut

An IGV file (.igv) is a tab-delimited text file that defines tracks. The first row contains column headings for chromosome, start location, end location, ...

igvtools

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Supported input file formats are: .cn, .igv, .sam, .bam, .aligned, .psl, .bed, and .vcf. Usage: igvtools sort ...

igvtools

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Used to prepare data files for tools that required sorted input files. Supported input file formats: .aligned, .bed, .cn, .igv, .psl, .sam, .bam, and .vcf.

Loading a Genome

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See here for information on downloading and configuring genome files for use with IGV without an internet connection. Loading Other Genomes. If you have the .

Loading Data and Attributes

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See File Formats for information about the file formats IGV accepts. To load data from the file system: Select File>Load from File. IGV displays the Select ...

New File Formats

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IGV 2.0 supports a number of new file formats, including: Cufflinks files · Custom file formats (custom specification of columns for the .igv file format) ...

Viewing Alignments

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Aligned reads from sequencing can be loaded into IGV in the BAM format, SAM format, or CRAM format. Both BAM and SAM files are described on the Samtools project ...

What is the format of the input file to the IGV software?

https://www.biostars.org

Hi everyone I am going to calculate the coverage of mapped data of the ngs analysis. I found igv software. What is the format of the input file ...