Samtools view:[samtools]view命令简介原创
[samtools]view命令简介原创
Running SAMtools Commands
https://hcc.unl.edu
SAMtools View. One of the most frequently used SAMtools command is view. The basic usage of the samtools view is: $ samtools view input_alignments.[bam|sam] ...
Samtools
http://www.htslib.org
Samtools: Reading/writing/editing/indexing/viewing SAM/BAM/CRAM format ; BCFtools: Reading/writing BCF2/VCF/gVCF files and calling/filtering/summarising SNP and ...
samtools view 使用小结
https://www.jianshu.com
samtools是常用的对sam/bam文件操作的工具,其中samtools view命令可以实现查看序列、sam-bam文件转换、过滤序列等功能。下面用实际的例子简单介绍 ...
samtools 使用
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我們可以使用samtools將bam檔儲存成sam黨,反之亦然,雖然tools一開始的defaut是input bam,但都是可以調整的。 bam 轉 sam: $samtools view input.bam > ...
samtools(1) manual page
http://www.htslib.org
samtools view [options] in.sam|in.bam|in.cram [region...] With no options or regions specified, prints all alignments in the specified input ...
samtools
http://www.htslib.org
NAME. samtools view – views and converts SAM/BAM/CRAM files. SYNOPSIS. samtools view [options] in.sam|in.bam|in.cram [region...] DESCRIPTION.
View First Few Records of BAM File · Issue #943 · samtools ...
https://github.com
Samtools will spot the output file descriptor closing and will then also exit, so it doesn't run through the entire contents of a large BAM.
使用samtools來看特定區域的alignments狀況
https://weitinglin.com
samtools的功能非常強大,也有很多用法,這篇有概略介紹,而這邊仔細講解一下比較細緻關於alignment檔案的extraction,就是檢視特定區域的alignment ...