Samtools index：使用samtools來看特定區域的alignments狀況
使用samtools來看特定區域的alignments狀況
2016年2月6日—首先，先將想要使用的bamfile用samtoolsindex過.$samtoolsindexsample.bam.接下來可以看指定的區域.＄samtoolsviewsample.bam12:7788426 ...。其他文章還包含有：「samtools」、「[samtools]index命令简介原创」、「from.BAMto.BAIusingsamtools」、「samtools(1)manualpage」、「RunningSAMtoolsCommands」、「samtools之index」、「samtools」、「HowtoSortandIndexaSAMfilewithoutconvertingit...」
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samtools
http://www.htslib.org
This index is needed when region arguments are used to limit samtools view and similar commands to particular regions of interest. When only one ...
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[samtools]index命令简介原创
https://blog.csdn.net
samtools index命令的功能描述：. 为了能够快速访问bam文件，可以为已经基于坐标排序后bam或者cram的文件创建索引，生成以.bai或者.crai为后缀的索引 ...
from .BAM to .BAI using samtools
https://www.biostars.org
Samtools index only accepts a single input file, so using a shell metacharacter to specify multiple files will not work. I usually use a shell ...
samtools(1) manual page
http://www.htslib.org
Index a coordinate-sorted SAM, BAM or CRAM file for fast random access. Note for SAM this only works if the file has been BGZF compressed first.
Running SAMtools Commands
https://hcc.unl.edu
SAMtools Index. The samtools index command creates a new index file that allows fast look-up of the data in a sorted SAM or BAM file.
samtools之index
https://www.omicsclass.com
samtools是一个用于操作sam和bam文件的工具合集，包含有许多命令，其中有index用于建立索引，使之快速访问bam文件。
samtools
http://www.htslib.org
NAME. samtools faidx – indexes or queries regions from a fasta file. SYNOPSIS. samtools faidx ref.fasta [region1 [...]] DESCRIPTION. Index ...
How to Sort and Index a SAM file without converting it ...
https://bioinformatics.stackex
Generally, I use samtools to sort and index BAM files. Samtools works also with BGZF compressed SAM but not with plain ones. I have terabytes of ...