Samtools manual：Sequence AlignmentMap Format Specification
Sequence AlignmentMap Format Specification
samtools(1) manual page
http://www.htslib.org
This command identifies target regions by examining the continuity of read depth, computes haploid consensus sequences of targets and outputs a ...
Samtools
http://www.htslib.org
Using CRAM within Samtools · Documentation · Manuals · HowTos · Specifications · Duplicate Marking · Zlib Benchmarks · CRAM Benchmarks · Publications · Support.
Samtools
http://www.htslib.org
Manual pages. Documentation for BCFtools, SAMtools, and HTSlib's utilities is available by using man command on the command line. The manual pages for ...
samtools
http://www.htslib.org
NAME. samtools view – views and converts SAM/BAM/CRAM files. SYNOPSIS. samtools view [options] in.sam|in.bam|in.cram [region...] DESCRIPTION.
Running SAMtools Commands
https://hcc.unl.edu
The samtools index command creates a new index file that allows fast look-up of the data in a sorted SAM or BAM file. $ samtools index input_alignments_sorted.
bcftools(1) Manual Page
https://samtools.github.io
BCFtools is a set of utilities that manipulate variant calls in the Variant Call Format (VCF) and its binary counterpart BCF. All commands work transparently ...
Samtools Manual Page
https://www.scribd.com
Manual page from samtools-1. NAME released on 18 July 2018. samtools – Utilities for the Sequence Alignment/Map (SAM) format. SYNOPSIS