Hg38 refGene GTF gz:which gtf file I can use?
which gtf file I can use?
Buildable assets
https://refgenie.databio.org
... gz refgenie build hg38/refgene_anno --files refgene=refGene.txt.gz ... 97.gtf.gz refgenie build hg38/ensembl-gtf --files ensembl_gtf=Homo_sapiens.GRCh38.97 ...
GENCODE
https://www.gencodegenes.org
GTF / GFF3 files · It contains the comprehensive gene annotation of lncRNA genes on the reference chromosomes · This is a subset of the main annotation file.
GENCODE
https://www.gencodegenes.org
GTF / GFF3 files · It contains the basic gene annotation on the reference chromosomes, scaffolds, assembly patches and alternate loci (haplotypes) · This is a ...
GRCh38 - hg38
https://www.ncbi.nlm.nih.gov
Homo sapiens (human) genome assembly GRCh38 (hg38) from Genome Reference Consortium [GCA_000001405.15 GCF_000001405.26]
GRCh38.p13 - hg38
https://www.ncbi.nlm.nih.gov
Homo sapiens (human) genome assembly GRCh38.p13 (hg38) from Genome Reference Consortium [GCA_000001405.28 GCF_000001405.39]
hg38 annotation file (gtf) UCSC format
https://www.biostars.org
Hey,. Does anyone know how to get the annotation gtf file for hg38 assembly UCSC format? I looked for it but I only found the ensembl one!
Index of goldenPathhg38bigZipsgenes
https://hgdownload.soe.ucsc.ed
Introduction ^^^^^^^^^^^^ This directory contains GTF files for the main gene transcript sets where available. They are sourced from the following gene ...
NGS 教程
https://www.biomooc.com
参考基因组主要包括序列文件fa和注释文件gtf。 本文主要关注物种是人和鼠。以human为例,常见的版本有hg19和hg38。有三个提供者ensemble,UCSC ...