Hg38 refGene GTF gz：Buildable assets
Buildable assets
...gzrefgeniebuildhg38/refgene_anno--filesrefgene=refGene.txt.gz...97.gtf.gzrefgeniebuildhg38/ensembl-gtf--filesensembl_gtf=Homo_sapiens.GRCh38.97 ...。其他文章還包含有：「GENCODE」、「GENCODE」、「GRCh38-hg38」、「GRCh38.p13-hg38」、「hg38annotationfile(gtf)UCSCformat」、「IndexofgoldenPathhg38bigZipsgenes」、「NGS教程」、「whichgtffileIcanuse?」
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GENCODE
https://www.gencodegenes.org
GTF / GFF3 files · It contains the comprehensive gene annotation of lncRNA genes on the reference chromosomes · This is a subset of the main annotation file.
GENCODE
https://www.gencodegenes.org
GTF / GFF3 files · It contains the basic gene annotation on the reference chromosomes, scaffolds, assembly patches and alternate loci (haplotypes) · This is a ...
GRCh38 - hg38
https://www.ncbi.nlm.nih.gov
Homo sapiens (human) genome assembly GRCh38 (hg38) from Genome Reference Consortium [GCA_000001405.15 GCF_000001405.26]
GRCh38.p13 - hg38
https://www.ncbi.nlm.nih.gov
Homo sapiens (human) genome assembly GRCh38.p13 (hg38) from Genome Reference Consortium [GCA_000001405.28 GCF_000001405.39]
hg38 annotation file (gtf) UCSC format
https://www.biostars.org
Hey,. Does anyone know how to get the annotation gtf file for hg38 assembly UCSC format? I looked for it but I only found the ensembl one!
Index of goldenPathhg38bigZipsgenes
https://hgdownload.soe.ucsc.ed
Introduction ^^^^^^^^^^^^ This directory contains GTF files for the main gene transcript sets where available. They are sourced from the following gene ...
NGS 教程
https://www.biomooc.com
参考基因组主要包括序列文件fa和注释文件gtf。 本文主要关注物种是人和鼠。以human为例，常见的版本有hg19和hg38。有三个提供者ensemble，UCSC ...
which gtf file I can use?
https://www.biostars.org
There are four gtf files: hg38.refGene.gtf.gz, hg38.ncbiRefSeq.gtf.gz, hg38.knownGene.gtf.gz and hg38.ensGene.gtf.gz in: http ...