IGV Color：Changing the Display
Changing the Display
UsetheColorLegendswindowtosetthedefaultdatarangeandcolorforheatmaps,whichIGVusestodisplaysegmentedcopynumber.。其他文章還包含有：「ColorLegends」、「ColorsinIGV」、「InterpretingColorbyBisulfiteMode」、「InterpretingColorbyInsertSize」、「InterpretingColorbyInsertSize」、「InterpretingColorbyPairOrientation」、「NewSequenceTrackPop」、「Preferences」、「ViewingAlignments」
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Color Legends
https://software.broadinstitut
By default, IGV uses heatmaps to display certain types of data (see Default Display). Use the Color Legends window to change the default colors for these ...
Colors in IGV
https://www.biostars.org
IGV colors paired-end alignments whose inferred insert size is larger than expected or whose mate read is aligned to a different chromosome. A ...
Interpreting Color by Bisulfite Mode
https://software.broadinstitut
Coloring by bisulfite mode in IGV allows for visualization of alignments of BS-Seq reads, a DNA-modification technique used to distinguish sites of DNA ...
Interpreting Color by Insert Size
https://software.broadinstitut
IGV uses color coding to flag anomalous insert sizes. When you select Color alignments>by insert size in the popup menu, the default coloring scheme is:.
Interpreting Color by Insert Size
https://software.broadinstitut
Coloring by insert size is for DNA alignments and is not designed to indicate RNA-Seq paired read ... IGV uses color coding to flag anomalous insert sizes.
Interpreting Color by Pair Orientation
https://software.broadinstitut
By selecting Color alignments>by pair orientation, you can flag anomalous pair orientations in IGV. ... IGV will display this rearrangement as shown below.
New Sequence Track Pop
https://software.broadinstitut
IGV uses color coding to flag anomalous insert sizes. Blue is for inserts that are smaller than expected. That is, the inferred insert size on the reference ...
Preferences
https://software.broadinstitut
Click here to change the background color of the IGV display. Use this to set a default font size for labeling tracks and features.
Viewing Alignments
https://software.broadinstitut
In a gapped alignment, IGV indicates insertions with respect to the reference with a purple I ( ) or red I for insertions greater than a user activated and ...