IGV Color：New Sequence Track Pop
New Sequence Track Pop
IGVusescolorcodingtoflaganomalousinsertsizes.Blueisforinsertsthataresmallerthanexpected.Thatis,theinferredinsertsizeonthereference ...。其他文章還包含有：「ChangingtheDisplay」、「ColorLegends」、「ColorsinIGV」、「InterpretingColorbyBisulfiteMode」、「InterpretingColorbyInsertSize」、「InterpretingColorbyInsertSize」、「InterpretingColorbyPairOrientation」、「Preferences」、「ViewingAlignments」
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Changing the Display
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Use the Color Legends window to set the default data range and color for heatmaps, which IGV uses to display segmented copy number.
Color Legends
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By default, IGV uses heatmaps to display certain types of data (see Default Display). Use the Color Legends window to change the default colors for these ...
Colors in IGV
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IGV colors paired-end alignments whose inferred insert size is larger than expected or whose mate read is aligned to a different chromosome. A ...
Interpreting Color by Bisulfite Mode
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Coloring by bisulfite mode in IGV allows for visualization of alignments of BS-Seq reads, a DNA-modification technique used to distinguish sites of DNA ...
Interpreting Color by Insert Size
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IGV uses color coding to flag anomalous insert sizes. When you select Color alignments>by insert size in the popup menu, the default coloring scheme is:.
Interpreting Color by Insert Size
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Coloring by insert size is for DNA alignments and is not designed to indicate RNA-Seq paired read ... IGV uses color coding to flag anomalous insert sizes.
Interpreting Color by Pair Orientation
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By selecting Color alignments>by pair orientation, you can flag anomalous pair orientations in IGV. ... IGV will display this rearrangement as shown below.
Preferences
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Click here to change the background color of the IGV display. Use this to set a default font size for labeling tracks and features.
Viewing Alignments
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In a gapped alignment, IGV indicates insertions with respect to the reference with a purple I ( ) or red I for insertions greater than a user activated and ...