Samtools sort：samtools sort bam file
samtools sort bam file
2018年6月8日—Abamiscoordinatesortedifthereadsaresortedbycoordinates.Soreadsfromthebeginningofthefirstchromosomearefirstinthefile.。其他文章還包含有：「RunningSAMtoolsCommands」、「SAMtools」、「samtoolssort&index」、「samtools(1)manualpage」、「samtools」、「samtools」、「WorkedexampleofuploadingSAMtoolsSort」、「[samtools]sort命令简介原创」
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Running SAMtools Commands
https://hcc.unl.edu
The samtools index command creates a new index file that allows fast look-up of the data in a sorted SAM or BAM file. $ samtools index input_alignments_sorted.
SAMtools
https://rnnh.github.io
SAMtools is a set of utilities that can manipulate alignment formats. It imports from and exports to the SAM, BAM & CRAM; does sorting, merging & indexing; and ...
samtools sort & index
https://www.jianshu.com
因此，本文将介绍samtools sort和samtools index命令。 samtools sort. 假设我们有一个bam文件，可以通过以下命令对其排序 samtools sort -@ 8 test.bam - ...
samtools(1) manual page
http://www.htslib.org
Index a coordinate-sorted SAM, BAM or CRAM file for fast random access. Note for SAM this only works if the file has been BGZF compressed first.
samtools
https://manpages.ubuntu.com
Mapped sequences are sorted by chromosome and position. -n Sort by read names (i.e., the QNAME field) rather than by chromosomal coordinates. -t TAG Sort first ...
samtools
http://www.htslib.org
Sort by read names (i.e., the QNAME field) using an alpha-numeric ordering, rather than by chromosomal coordinates. The alpha-numeric or “ ...
Worked example of uploading SAMtools Sort
https://docs.sevenbridges.com
Describe each subcommand in the Tool Editor · On the Seven Bridges Platform, navigate to Projects > SAMtools. · Click the Apps tab. · Click Add App. · Open the ...
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[samtools]sort命令简介原创
https://blog.csdn.net
下图为一个sort命令的使用实例。其中，压缩等级设置为最高级9，为每一个线程设置的内存为90M，同时设置了输出文件名，临时文件的前缀和线程数。