Samtools fastq:samtools
samtools
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2024年4月15日—NAME.samtools-fasta,samtools-fastq–convertsaSAM/BAM/CRAMfiletoFASTAorFASTQ.SYNOPSIS.samtoolsfastq[options]in.bam。其他文章還包含有:「samtools(1)manualpage」、「Samtools」、「ConvertingBAMtofastq」、「samtoolsfastafastq」、「FASTQtoBAMCRAM」、「samtoolsfastqcouldmergepairmembersandoutputjusta...」、「FASTQtoBAMtoCRAMtoFASTQ」、「samtoolsfastqcompression」、「samtoolsfastqtoenable...
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samtools(1) manual page
http://www.htslib.org
Converts one or more FASTQ files to unaligned SAM, BAM or CRAM. These formats offer a richer capability of tracking sample meta-data via the SAM ...
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Samtools
http://www.htslib.org
FASTQ to BAM / CRAM · WGS/WES Mapping to Variant Calls · Filtering of VCF Files · Using CRAM within Samtools · Documentation.
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Converting BAM to fastq
https://www.metagenomics.wiki
sort paired read alignment .bam file (sort by name -n). samtools sort -n SAMPLE.bam -o SAMPLE_sorted.bam. # save fastq reads in separate R1 and R2 files.
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samtools fasta fastq
https://manpages.ubuntu.com
DESCRIPTION. Converts a BAM or CRAM into either FASTQ or FASTA format depending on the command invoked. The files will be automatically compressed if the file ...
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FASTQ to BAM CRAM
http://www.htslib.org
FASTQ to BAM / CRAM · Alignment / mapping to a known reference · Mapping · Fixing of mate-pair issues · Marking duplicates (part 1: preparation) · Sorting to ...
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samtools fastq could merge pair members and output just a ...
https://github.com
The intention of samtools fastq is very much to reverse the alignment process. Ie to take an aligned file and reproduce something akin to the ...
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FASTQ to BAM to CRAM to FASTQ
https://www.biostars.org
In the conversion from CRAM to FASTQ, I have some issues. I have this code: samtools fastq -T $bwarefgenomepath ART03_FINAL.cram > BACKUP.fastq ...
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samtools fastq compression
https://www.biostars.org
I'm not sure if I am giving the right command for compression, since the .gz file is huge. Does this command look ok?
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samtools fastq to enable filter by tag "
https://github.com
The fastq command has all the bells and whistles, but view can also output basic FASTQ that may suffice for your purposes. So you might try ...