Samtools fastq：samtools fasta fastq
samtools fasta fastq
DESCRIPTION.ConvertsaBAMorCRAMintoeitherFASTQorFASTAformatdependingonthecommandinvoked.Thefileswillbeautomaticallycompressedifthefile ...。其他文章還包含有：「ConvertingBAMtofastq」、「FASTQtoBAMCRAM」、「FASTQtoBAMtoCRAMtoFASTQ」、「Samtools」、「samtoolsfastqcompression」、「samtoolsfastqcouldmergepairmembersandoutputjusta...」、「samtoolsfastqtoenablefilterbytag"」、「samtools(1)manualpage...
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Converting BAM to fastq
https://www.metagenomics.wiki
sort paired read alignment .bam file (sort by name -n). samtools sort -n SAMPLE.bam -o SAMPLE_sorted.bam. # save fastq reads in separate R1 and R2 files.
FASTQ to BAM CRAM
http://www.htslib.org
FASTQ to BAM / CRAM · Alignment / mapping to a known reference · Mapping · Fixing of mate-pair issues · Marking duplicates (part 1: preparation) · Sorting to ...
FASTQ to BAM to CRAM to FASTQ
https://www.biostars.org
In the conversion from CRAM to FASTQ, I have some issues. I have this code: samtools fastq -T $bwarefgenomepath ART03_FINAL.cram > BACKUP.fastq ...
Samtools
http://www.htslib.org
FASTQ to BAM / CRAM · WGS/WES Mapping to Variant Calls · Filtering of VCF Files · Using CRAM within Samtools · Documentation.
samtools fastq compression
https://www.biostars.org
I'm not sure if I am giving the right command for compression, since the .gz file is huge. Does this command look ok?
samtools fastq could merge pair members and output just a ...
https://github.com
The intention of samtools fastq is very much to reverse the alignment process. Ie to take an aligned file and reproduce something akin to the ...
samtools fastq to enable filter by tag "
https://github.com
The fastq command has all the bells and whistles, but view can also output basic FASTQ that may suffice for your purposes. So you might try ...
samtools(1) manual page
http://www.htslib.org
Converts one or more FASTQ files to unaligned SAM, BAM or CRAM. These formats offer a richer capability of tracking sample meta-data via the SAM ...
samtools
http://www.htslib.org
NAME. samtools-fasta, samtools-fastq – converts a SAM/BAM/CRAM file to FASTA or FASTQ. SYNOPSIS. samtools fastq [options] in.bam