Samtools sort: failed to read header from：samtools sort
samtools sort
2024年4月1日—取决于SAMtools（http://samtools.sourceforge.net/）和BAMtools（https://github.com/pezmaster31/bamtools）。也使用BioPerl，它包含在下载的tarball中 ...。其他文章還包含有：「Samtoolsfailedtoreadheaderofsamfile·Issue#1774」、「[main」、「[main」、「WhyIgettheerrorfailtoreadtheheaderfrom"」、「NextflowError」、「SAMTOOLSfailedtoreadheaderfrom"」、「samtoolserror([main」、「HISAT2errorfai...
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Samtools failed to read header of sam file · Issue #1774
https://github.com
Hello, I have been struggling with running samtools because the program can not read the header of my sam file so i get the following error: ...
[main
https://www.biostars.org
Hi all, I get the following error when reading the sample.bam. The file was converted from sam to bam using the following command: samtools ...
[main
https://www.biostars.org
I am attempting to run a file through an algorithm I have been using, HLA*LA. On running the samtools command within the algorithm, I have ...
Why I get the error fail to read the header from "
https://stackoverflow.com
Samtools is just complaining about a missing input file: [main_samview] fail to read the header from -. The problem is that bwa mem is ...
Nextflow Error
https://bioinformatics.stackex
This is not a Nextflow error. The problem is that without an input file, samtools sort tries to read from stdin. Using a recent samtools ...
SAMTOOLS failed to read header from "
https://www.reddit.com
The samtools error is likely because it is receiving no output from the bwa mem command. Try running the bwa mem command by itself, and see if ...
samtools error ([main
https://github.com
bam is empty, and so I think this causes the issue for the samtools sort command. Any idea what could be causing this? @4aabeb37-0ae5-4289-ab27- ...
HISAT2 error failed to read header from "
https://help.galaxyproject.org
Hello today i was using HiSAT2 to fo a mapping of my fastq paired-end secuences to the reference genome of my organism (Hydractinia ...
SAM to BAM -
https://www.seqanswers.com
i use -t to indicate that the sam file contains tab delimiter, and no header. what could be the issue? Thanks a lot. Attached Files. Capture ...