Samtools sort: failed to read header from
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「Samtools sort: failed to read header from」文章包含有:「Samtoolsfailedtoreadheaderofsamfile·Issue#1774」、「[main」、「[main」、「WhyIgettheerrorfailtoreadtheheaderfrom"」、「NextflowError」、「SAMTOOLSfailedtoreadheaderfrom"」、「samtoolssort」、「samtoolserror([main」、「HISAT2errorfailedtoreadheaderfrom"」、「SAMtoBAM-」
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Samtools failed to read header of sam file · Issue #1774
https://github.com
Hello, I have been struggling with running samtools because the program can not read the header of my sam file so i get the following error: ...
![[main](https://api.multiavatar.com/%5Bmain_samview%5D+fail+to+read+the+header+from+sample.bam.png?apikey=viVnb6N20jclO8)
[main
https://www.biostars.org
Hi all, I get the following error when reading the sample.bam. The file was converted from sam to bam using the following command: samtools ...
![[main](https://api.multiavatar.com/%5Bmain_samview%5D+fail+to+read+the+header+from+%26quot%3B-%26quot%3B..png?apikey=viVnb6N20jclO8)
[main
https://www.biostars.org
I am attempting to run a file through an algorithm I have been using, HLA*LA. On running the samtools command within the algorithm, I have ...
![Why I get the error fail to read the header from "](https://api.multiavatar.com/Why+I+get+the+error+fail+to+read+the+header+from+%26quot%3B-%26quot%3B+only+....png?apikey=viVnb6N20jclO8)
Why I get the error fail to read the header from "
https://stackoverflow.com
Samtools is just complaining about a missing input file: [main_samview] fail to read the header from -. The problem is that bwa mem is ...
![Nextflow Error](https://api.multiavatar.com/Nextflow+Error%3A+failed+to+read+header+from+%26quot%3B-%26quot%3B.png?apikey=viVnb6N20jclO8)
Nextflow Error
https://bioinformatics.stackex
This is not a Nextflow error. The problem is that without an input file, samtools sort tries to read from stdin. Using a recent samtools ...
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SAMTOOLS failed to read header from "
https://www.reddit.com
The samtools error is likely because it is receiving no output from the bwa mem command. Try running the bwa mem command by itself, and see if ...
![samtools sort](https://api.multiavatar.com/samtools+sort%3A+failed+to+read+header+from+%E2%80%9C-%E2%80%9C+%E5%8E%9F%E5%88%9B.png?apikey=viVnb6N20jclO8)
samtools sort
https://blog.csdn.net
取决于SAMtools(http://samtools.sourceforge.net/)和BAMtools(https://github.com/pezmaster31/bamtools)。 也使用BioPerl,它包含在下载的tarball中 ...
![samtools error ([main](https://api.multiavatar.com/samtools+error+%28%5Bmain_samview%5D+fail+to+read+the+header+....png?apikey=viVnb6N20jclO8)
samtools error ([main
https://github.com
bam is empty, and so I think this causes the issue for the samtools sort command. Any idea what could be causing this? @4aabeb37-0ae5-4289-ab27- ...
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HISAT2 error failed to read header from "
https://help.galaxyproject.org
Hello today i was using HiSAT2 to fo a mapping of my fastq paired-end secuences to the reference genome of my organism (Hydractinia ...
![SAM to BAM -](https://api.multiavatar.com/SAM+to+BAM+---+samtools+fail+to+read+error.png?apikey=viVnb6N20jclO8)
SAM to BAM -
https://www.seqanswers.com
i use -t to indicate that the sam file contains tab delimiter, and no header. what could be the issue? Thanks a lot. Attached Files. Capture ...